IL_6XDR_198

3D structure

PDB id

6XDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XDR_198 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0594

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6XDR|1|a|U|1851
6XDR|1|a|U|1852
6XDR|1|a|A|1853
6XDR|1|a|A|1854
6XDR|1|a|U|1855
6XDR|1|a|U|1856
6XDR|1|a|G|1857
6XDR|1|a|A|1858
6XDR|1|a|U|1859
6XDR|1|a|G|1860
*
6XDR|1|a|U|1882
6XDR|1|a|U|1883
6XDR|1|a|G|1884
6XDR|1|a|A|1885
6XDR|1|a|U|1886
6XDR|1|a|C|1887
6XDR|1|a|G|1888
6XDR|1|a|A|1889
6XDR|1|a|A|1890
6XDR|1|a|G|1891

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA