3D structure

PDB id
6XDR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
4.7 Å

Loop

Sequence
UUAAUUGAUG*UUGAUCGAAG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XDR_198 not in the Motif Atlas
Homologous match to IL_5J7L_387
Geometric discrepancy: 0.0594
The information below is about IL_5J7L_387
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_61249.1
Basepair signature
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW
Number of instances in this motif group
1

Unit IDs

6XDR|1|a|U|1851
6XDR|1|a|U|1852
6XDR|1|a|A|1853
6XDR|1|a|A|1854
6XDR|1|a|U|1855
6XDR|1|a|U|1856
6XDR|1|a|G|1857
6XDR|1|a|A|1858
6XDR|1|a|U|1859
6XDR|1|a|G|1860
*
6XDR|1|a|U|1882
6XDR|1|a|U|1883
6XDR|1|a|G|1884
6XDR|1|a|A|1885
6XDR|1|a|U|1886
6XDR|1|a|C|1887
6XDR|1|a|G|1888
6XDR|1|a|A|1889
6XDR|1|a|A|1890
6XDR|1|a|G|1891

Current chains

Chain a
23S rRNA

Nearby chains

Chain A
Transfer RNA; tRNA

Coloring options:


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