IL_6XE0_020

3D structure

PDB id

6XE0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of NusG-CTD bound to 70S ribosome (30S: NusG-CTD fragment)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XE0_020 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1355

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6XE0|1|W|U|409
6XE0|1|W|G|410
6XE0|1|W|A|411
6XE0|1|W|A|412
6XE0|1|W|G|413
6XE0|1|W|A|414
6XE0|1|W|A|415
6XE0|1|W|G|416
*
6XE0|1|W|U|427
6XE0|1|W|G|428
6XE0|1|W|U|429
6XE0|1|W|A|430
6XE0|1|W|A|431
6XE0|1|W|A|432
6XE0|1|W|G|433

Current chains

Chain W

16s rRNA

Nearby chains

Chain C

30S ribosomal protein S4