IL_6XE0_022

3D structure

PDB id

6XE0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of NusG-CTD bound to 70S ribosome (30S: NusG-CTD fragment)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

6XE0|1|W|U|485

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XE0_022 not in the Motif Atlas

Homologous match to IL_5J7L_022

Geometric discrepancy: 0.128

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6XE0|1|W|G|446
6XE0|1|W|G|447
6XE0|1|W|A|448
6XE0|1|W|G|449
6XE0|1|W|G|450
*
6XE0|1|W|C|483
6XE0|1|W|G|484
6XE0|1|W|U|485
6XE0|1|W|U|486
6XE0|1|W|A|487
6XE0|1|W|C|488

Current chains

Chain W

16s rRNA

Nearby chains

Chain C

30S ribosomal protein S4

Chain P

30S ribosomal protein S16