IL_6XE0_040

3D structure

PDB id

6XE0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of NusG-CTD bound to 70S ribosome (30S: NusG-CTD fragment)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GGG*UU

Length

5 nucleotides

Bulged bases

6XE0|1|W|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XE0_040 not in the Motif Atlas

Homologous match to IL_4LFB_036

Geometric discrepancy: 0.5332

The information below is about IL_4LFB_036

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

6XE0|1|W|G|925
6XE0|1|W|G|926
6XE0|1|W|G|927
*
6XE0|1|W|U|1390
6XE0|1|W|U|1391

Current chains

Chain W

16s rRNA

Nearby chains