IL_6XE0_056
3D structure
- PDB id
- 6XE0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of NusG-CTD bound to 70S ribosome (30S: NusG-CTD fragment)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.8 Å
Loop
- Sequence
- CGACC*GCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XE0_056 not in the Motif Atlas
- Homologous match to IL_5J7L_056
- Geometric discrepancy: 0.1994
- The information below is about IL_5J7L_056
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
6XE0|1|W|C|1259
6XE0|1|W|G|1260
6XE0|1|W|A|1261
6XE0|1|W|C|1262
6XE0|1|W|C|1263
*
6XE0|1|W|G|1272
6XE0|1|W|C|1273
6XE0|1|W|A|1274
6XE0|1|W|A|1275
6XE0|1|W|G|1276
Current chains
- Chain W
- 16s rRNA
Nearby chains
- Chain M
- 30S ribosomal protein S14
- Chain S
- 30S ribosomal protein S19
- Chain V
- Transcription termination/antitermination protein NusG
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