IL_6XE0_057

3D structure

PDB id

6XE0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of NusG-CTD bound to 70S ribosome (30S: NusG-CTD fragment)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XE0_057 not in the Motif Atlas

Homologous match to IL_5J7L_057

Geometric discrepancy: 0.1448

The information below is about IL_5J7L_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6XE0|1|W|C|1303
6XE0|1|W|G|1304
6XE0|1|W|G|1305
6XE0|1|W|A|1306
6XE0|1|W|U|1307
6XE0|1|W|U|1308
*
6XE0|1|W|A|1329
6XE0|1|W|U|1330
6XE0|1|W|G|1331
6XE0|1|W|A|1332
6XE0|1|W|A|1333
6XE0|1|W|G|1334

Current chains

Chain W

16s rRNA

Nearby chains

Chain L

30S ribosomal protein S13