IL_6XE0_065

3D structure

PDB id

6XE0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of NusG-CTD bound to 70S ribosome (30S: NusG-CTD fragment)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

6XE0|1|W|A|1441

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XE0_065 not in the Motif Atlas

Geometric match to IL_4V9F_098

Geometric discrepancy: 0.2121

The information below is about IL_4V9F_098

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

6XE0|1|W|U|1440
6XE0|1|W|A|1441
6XE0|1|W|G|1442
*
6XE0|1|W|C|1460
6XE0|1|W|G|1461

Current chains

Chain W

16s rRNA

Nearby chains

Chain T

30S ribosomal protein S20