3D structure

PDB id
6XGF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex B (TTC-B) containing an 30 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
5 Å

Loop

Sequence
GGAUAAC*GCUAAUAC
Length
15 nucleotides
Bulged bases
6XGF|1|D|U|173
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XGF_012 not in the Motif Atlas
Homologous match to IL_5J7L_012
Geometric discrepancy: 0.134
The information below is about IL_5J7L_012
Detailed Annotation
tWH-tWH-tHW-tHW
Broad Annotation
No text annotation
Motif group
IL_80604.6
Basepair signature
cWW-cWW-tWH-tWH-tHW-tHW-cWW
Number of instances in this motif group
3

Unit IDs

6XGF|1|D|G|147
6XGF|1|D|G|148
6XGF|1|D|A|149
6XGF|1|D|U|150
6XGF|1|D|A|151
6XGF|1|D|A|152
6XGF|1|D|C|153
*
6XGF|1|D|G|168
6XGF|1|D|C|169
6XGF|1|D|U|170
6XGF|1|D|A|171
6XGF|1|D|A|172
6XGF|1|D|U|173
6XGF|1|D|A|174
6XGF|1|D|C|175

Current chains

Chain D
16S rRNA

Nearby chains

Chain E
30S ribosomal protein S20

Coloring options:


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