IL_6XGF_014

3D structure

PDB id

6XGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 30 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

6XGF|1|D|U|244, 6XGF|1|D|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XGF_014 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.0755

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

6XGF|1|D|G|242
6XGF|1|D|A|243
6XGF|1|D|U|244
6XGF|1|D|U|245
6XGF|1|D|A|246
6XGF|1|D|G|247
*
6XGF|1|D|C|277
6XGF|1|D|G|278
6XGF|1|D|A|279
6XGF|1|D|C|280
6XGF|1|D|G|281
6XGF|1|D|A|282
6XGF|1|D|U|283
6XGF|1|D|C|284

Current chains

Chain D

16S rRNA

Nearby chains

Chain R

30S ribosomal protein S12

Chain V

30S ribosomal protein S17