3D structure

PDB id
6XGF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex B (TTC-B) containing an 30 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
5 Å

Loop

Sequence
GAAAC*GAGAUAGC
Length
13 nucleotides
Bulged bases
6XGF|1|a|G|801, 6XGF|1|a|G|805
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XGF_082 not in the Motif Atlas
Geometric match to IL_7RQB_018
Geometric discrepancy: 0.0596
The information below is about IL_7RQB_018
Detailed Annotation
tHW-tHW cross-strand stack
Broad Annotation
No text annotation
Motif group
IL_17470.6
Basepair signature
cWW-tWW-L-R-tWH-L-cWW
Number of instances in this motif group
7

Unit IDs

6XGF|1|a|G|674
6XGF|1|a|A|675
6XGF|1|a|A|676
6XGF|1|a|A|677
6XGF|1|a|C|678
*
6XGF|1|a|G|799
6XGF|1|a|A|800
6XGF|1|a|G|801
6XGF|1|a|A|802
6XGF|1|a|U|803
6XGF|1|a|A|804
6XGF|1|a|G|805
6XGF|1|a|C|806

Current chains

Chain a
23S rRNA

Nearby chains

Chain l
50S ribosomal protein L4
Chain u
50S ribosomal protein L15

Coloring options:


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