3D structure

PDB id
6XGF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex B (TTC-B) containing an 30 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
5 Å

Loop

Sequence
GUUG*CAUC
Length
8 nucleotides
Bulged bases
6XGF|1|a|U|1061
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XGF_108 not in the Motif Atlas
Homologous match to IL_5J7L_285
Geometric discrepancy: 0.2561
The information below is about IL_5J7L_285
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_92446.2
Basepair signature
cWW-cWW-R-L-L
Number of instances in this motif group
5

Unit IDs

6XGF|1|a|G|1059
6XGF|1|a|U|1060
6XGF|1|a|U|1061
6XGF|1|a|G|1062
*
6XGF|1|a|C|1076
6XGF|1|a|A|1077
6XGF|1|a|U|1078
6XGF|1|a|C|1079

Current chains

Chain a
23S rRNA

Nearby chains

Chain Y
50S ribosomal protein L11

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.7843 s
Application loaded.