3D structure

PDB id
6XGF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex B (TTC-B) containing an 30 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
5 Å

Loop

Sequence
CUAAG*CGAUG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XGF_116 not in the Motif Atlas
Homologous match to IL_5J7L_292
Geometric discrepancy: 0.0535
The information below is about IL_5J7L_292
Detailed Annotation
UAA/GAN
Broad Annotation
UAA/GAN
Motif group
IL_89021.2
Basepair signature
cWW-L-R-L-R-tHS-cWW
Number of instances in this motif group
6

Unit IDs

6XGF|1|a|C|1351
6XGF|1|a|U|1352
6XGF|1|a|A|1353
6XGF|1|a|A|1354
6XGF|1|a|G|1355
*
6XGF|1|a|C|1376
6XGF|1|a|G|1377
6XGF|1|a|A|1378
6XGF|1|a|U|1379
6XGF|1|a|G|1380

Current chains

Chain a
23S rRNA

Nearby chains

Chain h
50S ribosomal protein L2
Chain m
50S ribosomal protein L34

Coloring options:


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