IL_6XHV_083

3D structure

PDB id

6XHV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XHV_083 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.3132

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

6XHV|1|1A|G|2110
6XHV|1|1A|C|2111
6XHV|1|1A|G|2112
6XHV|1|1A|U|2113
6XHV|1|1A|A|2114
6XHV|1|1A|G|2115
6XHV|1|1A|G|2116
6XHV|1|1A|A|2117
6XHV|1|1A|U|2118
6XHV|1|1A|A|2119
6XHV|1|1A|G|2120
*
6XHV|1|1A|C|2178
6XHV|1|1A|C|2179

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1y

Transfer RNA; tRNA