IL_6XHV_187

3D structure

PDB id

6XHV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

6XHV|1|2A|U|504, 6XHV|1|2A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XHV_187 not in the Motif Atlas

Geometric match to IL_7RQB_014

Geometric discrepancy: 0.0607

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

6XHV|1|2A|G|481
6XHV|1|2A|A|482
6XHV|1|2A|A|483
6XHV|1|2A|C|484
*
6XHV|1|2A|G|496
6XHV|1|2A|A|497
6XHV|1|2A|G|498
6XHV|1|2A|U|499
6XHV|1|2A|G|500
6XHV|1|2A|A|501
6XHV|1|2A|A|502
6XHV|1|2A|A|503
6XHV|1|2A|U|504
6XHV|1|2A|A|505
6XHV|1|2A|G|506
6XHV|1|2A|A|507
6XHV|1|2A|G|508
6XHV|1|2A|C|509

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2W

50S ribosomal protein L22

Chain 2Y

50S ribosomal protein L24