IL_6XHV_296

3D structure

PDB id

6XHV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

6XHV|1|2a|U|244, 6XHV|1|2a|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XHV_296 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.0996

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.4

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

6XHV|1|2a|C|242
6XHV|1|2a|A|243
6XHV|1|2a|U|244
6XHV|1|2a|C|245
6XHV|1|2a|A|246
6XHV|1|2a|G|247
*
6XHV|1|2a|C|277
6XHV|1|2a|G|278
6XHV|1|2a|A|279
6XHV|1|2a|C|280
6XHV|1|2a|G|281
6XHV|1|2a|A|282
6XHV|1|2a|C|283
6XHV|1|2a|G|284

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2l

30S ribosomal protein S12

Chain 2q

30S ribosomal protein S17