3D structure

PDB id
6XHW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.5 Å

Loop

Sequence
CUAAG*CGAAG
Length
10 nucleotides
Bulged bases
6XHW|1|1A|A|1156
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XHW_034 not in the Motif Atlas
Homologous match to IL_7RQB_036
Geometric discrepancy: 0.0342
The information below is about IL_7RQB_036
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_89002.2
Basepair signature
cWW-tWH-L-tHS-cWW
Number of instances in this motif group
20

Unit IDs

6XHW|1|1A|C|998
6XHW|1|1A|U|999
6XHW|1|1A|A|1000
6XHW|1|1A|A|1001
6XHW|1|1A|G|1002
*
6XHW|1|1A|C|1153
6XHW|1|1A|G|1154
6XHW|1|1A|A|1155
6XHW|1|1A|A|1156
6XHW|1|1A|G|1157

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 13
50S ribosomal protein L30
Chain 1B
5S ribosomal RNA; 5S rRNA
Chain 1U
50S ribosomal protein L20
Chain 1V
50S ribosomal protein L21

Coloring options:


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