IL_6XHW_060

3D structure

PDB id

6XHW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

6XHW|1|1A|C|1543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XHW_060 not in the Motif Atlas

Homologous match to IL_7RQB_063

Geometric discrepancy: 0.0589

The information below is about IL_7RQB_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02656.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6XHW|1|1A|G|1526
6XHW|1|1A|G|1527
6XHW|1|1A|A|1528
6XHW|1|1A|A|1528|||A
6XHW|1|1A|G|1529
*
6XHW|1|1A|U|1540
6XHW|1|1A|G|1541
6XHW|1|1A|A|1542
6XHW|1|1A|C|1543
6XHW|1|1A|A|1544
6XHW|1|1A|A|1545
6XHW|1|1A|C|1546

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains