IL_6XHW_183

3D structure

PDB id

6XHW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGAAUC*GAUAG

Length

11 nucleotides

Bulged bases

6XHW|1|2A|A|283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XHW_183 not in the Motif Atlas

Geometric match to IL_2QWY_007

Geometric discrepancy: 0.3583

The information below is about IL_2QWY_007

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6XHW|1|2A|C|280
6XHW|1|2A|G|281
6XHW|1|2A|A|282
6XHW|1|2A|A|283
6XHW|1|2A|U|284
6XHW|1|2A|C|285
*
6XHW|1|2A|G|356
6XHW|1|2A|A|357
6XHW|1|2A|U|358
6XHW|1|2A|A|359
6XHW|1|2A|G|360

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains