3D structure

PDB id
6XHW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.5 Å

Loop

Sequence
UUAAG*CGGAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XHW_188 not in the Motif Atlas
Homologous match to IL_7RQB_016
Geometric discrepancy: 0.0674
The information below is about IL_7RQB_016
Detailed Annotation
AAA cross-strand stack
Broad Annotation
AAA cross-strand stack
Motif group
IL_17136.1
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
24

Unit IDs

6XHW|1|2A|U|606
6XHW|1|2A|U|607
6XHW|1|2A|A|608
6XHW|1|2A|A|609
6XHW|1|2A|G|610
*
6XHW|1|2A|C|618
6XHW|1|2A|G|619
6XHW|1|2A|G|620
6XHW|1|2A|A|621
6XHW|1|2A|G|622

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 2F
50S ribosomal protein L4
Chain 2P
50S ribosomal protein L15

Coloring options:


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