IL_6XHW_269

3D structure

PDB id

6XHW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

6XHW|1|2A|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XHW_269 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.0529

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

6XHW|1|2A|U|2636
6XHW|1|2A|U|2637
6XHW|1|2A|G|2638
6XHW|1|2A|A|2639
6XHW|1|2A|G|2640
*
6XHW|1|2A|C|2774
6XHW|1|2A|A|2775
6XHW|1|2A|A|2776
6XHW|1|2A|G|2777
6XHW|1|2A|A|2778
6XHW|1|2A|U|2779
6XHW|1|2A|G|2780
6XHW|1|2A|A|2781
6XHW|1|2A|G|2782

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2N

50S ribosomal protein L13