IL_6XHW_302

3D structure

PDB id

6XHW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XHW_302 not in the Motif Atlas

Geometric match to IL_4LFB_019

Geometric discrepancy: 0.0892

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

6XHW|1|2a|G|450
6XHW|1|2a|A|451
6XHW|1|2a|A|452
6XHW|1|2a|A|453
6XHW|1|2a|C|454
6XHW|1|2a|C|455
*
6XHW|1|2a|G|476
6XHW|1|2a|A|477
6XHW|1|2a|C|479
6XHW|1|2a|U|480
6XHW|1|2a|G|481
6XHW|1|2a|A|482
6XHW|1|2a|C|483

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2p

30S ribosomal protein S16