3D structure

PDB id
6XHW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.5 Å

Loop

Sequence
GA*UGAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XHW_310 not in the Motif Atlas
Geometric match to IL_4LFB_027
Geometric discrepancy: 0.0992
The information below is about IL_4LFB_027
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
Major groove platform
Motif group
IL_50694.7
Basepair signature
cWW-tSH-cWW-L
Number of instances in this motif group
27

Unit IDs

6XHW|1|2a|G|654
6XHW|1|2a|A|655
*
6XHW|1|2a|U|751
6XHW|1|2a|G|752
6XHW|1|2a|A|753
6XHW|1|2a|C|754

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2h
30S ribosomal protein S8
Chain 2o
30S ribosomal protein S15

Coloring options:


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