IL_6XHX_054

3D structure

PDB id

6XHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with erythromycin and protein Y (YfiA) at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

6XHX|1|1A|U|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XHX_054 not in the Motif Atlas

Homologous match to IL_7RQB_055

Geometric discrepancy: 0.0495

The information below is about IL_7RQB_055

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

6XHX|1|1A|C|1417
6XHX|1|1A|G|1418
6XHX|1|1A|A|1419
6XHX|1|1A|U|1420
6XHX|1|1A|G|1421
*
6XHX|1|1A|C|1577
6XHX|1|1A|U|1578
6XHX|1|1A|A|1579
6XHX|1|1A|A|1580
6XHX|1|1A|G|1581

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains