3D structure

PDB id
6XHX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with erythromycin and protein Y (YfiA) at 2.55A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
CAUCAG*CGACGACG
Length
14 nucleotides
Bulged bases
6XHX|1|1a|U|244, 6XHX|1|1a|C|280
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XHX_125 not in the Motif Atlas
Homologous match to IL_4LFB_011
Geometric discrepancy: 0.0791
The information below is about IL_4LFB_011
Detailed Annotation
Kink-turn with non-sequential stacking
Broad Annotation
Kink-turn
Motif group
IL_46174.3
Basepair signature
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
Number of instances in this motif group
5

Unit IDs

6XHX|1|1a|C|242
6XHX|1|1a|A|243
6XHX|1|1a|U|244
6XHX|1|1a|C|245
6XHX|1|1a|A|246
6XHX|1|1a|G|247
*
6XHX|1|1a|C|277
6XHX|1|1a|G|278
6XHX|1|1a|A|279
6XHX|1|1a|C|280
6XHX|1|1a|G|281
6XHX|1|1a|A|282
6XHX|1|1a|C|283
6XHX|1|1a|G|284

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1l
30S ribosomal protein S12
Chain 1q
30S ribosomal protein S17

Coloring options:


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