IL_6XHX_257

3D structure

PDB id

6XHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with erythromycin and protein Y (YfiA) at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

6XHX|1|2A|G|2116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XHX_257 not in the Motif Atlas

Geometric match to IL_1MZP_002

Geometric discrepancy: 0.3075

The information below is about IL_1MZP_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

6XHX|1|2A|G|2110
6XHX|1|2A|C|2111
6XHX|1|2A|G|2112
6XHX|1|2A|U|2113
6XHX|1|2A|A|2114
6XHX|1|2A|G|2115
6XHX|1|2A|G|2116
6XHX|1|2A|A|2117
6XHX|1|2A|U|2118
6XHX|1|2A|A|2119
6XHX|1|2A|G|2120
*
6XHX|1|2A|C|2178
6XHX|1|2A|C|2179

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains