IL_6XHX_258

3D structure

PDB id

6XHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with erythromycin and protein Y (YfiA) at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XHX_258 not in the Motif Atlas

Homologous match to IL_7RQB_086

Geometric discrepancy: 0.2197

The information below is about IL_7RQB_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XHX|1|2A|G|2124
6XHX|1|2A|G|2125
6XHX|1|2A|A|2126
6XHX|1|2A|G|2127
*
6XHX|1|2A|C|2161
6XHX|1|2A|G|2162
6XHX|1|2A|C|2163
6XHX|1|2A|C|2164
6XHX|1|2A|G|2165
6XHX|1|2A|G|2166
6XHX|1|2A|U|2167
6XHX|1|2A|G|2168
6XHX|1|2A|A|2169
6XHX|1|2A|A|2170
6XHX|1|2A|A|2171
6XHX|1|2A|U|2172
6XHX|1|2A|A|2173
6XHX|1|2A|C|2174

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains