IL_6XHX_267

3D structure

PDB id

6XHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with erythromycin and protein Y (YfiA) at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CCGAG*CGGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XHX_267 not in the Motif Atlas

Homologous match to IL_7RQB_095

Geometric discrepancy: 0.0757

The information below is about IL_7RQB_095

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

6XHX|1|2A|C|2466
6XHX|1|2A|C|2467
6XHX|1|2A|G|2468
6XHX|1|2A|A|2469
6XHX|1|2A|G|2470
*
6XHX|1|2A|C|2480
6XHX|1|2A|G|2481
6XHX|1|2A|G|2482
6XHX|1|2A|C|2483
6XHX|1|2A|G|2484

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2Q

50S ribosomal protein L16

Chain 2Z

50S ribosomal protein L25