3D structure

PDB id
6XHX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with erythromycin and protein Y (YfiA) at 2.55A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
GAAACC*GACUGAC
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XHX_306 not in the Motif Atlas
Homologous match to IL_4LFB_019
Geometric discrepancy: 0.1001
The information below is about IL_4LFB_019
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_31561.1
Basepair signature
cWW-L-R-tWH-tWH-L-R-L-cWW
Number of instances in this motif group
1

Unit IDs

6XHX|1|2a|G|450
6XHX|1|2a|A|451
6XHX|1|2a|A|452
6XHX|1|2a|A|453
6XHX|1|2a|C|454
6XHX|1|2a|C|455
*
6XHX|1|2a|G|476
6XHX|1|2a|A|477
6XHX|1|2a|C|479
6XHX|1|2a|U|480
6XHX|1|2a|G|481
6XHX|1|2a|A|482
6XHX|1|2a|C|483

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2p
30S ribosomal protein S16

Coloring options:


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