IL_6XHX_308

3D structure

PDB id

6XHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with erythromycin and protein Y (YfiA) at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

6XHX|1|2a|A|532, 6XHX|1|2a|U|534

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XHX_308 not in the Motif Atlas

Homologous match to IL_4LFB_021

Geometric discrepancy: 0.09

The information below is about IL_4LFB_021

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.4

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6XHX|1|2a|G|515
6XHX|1|2a|PSU|516
6XHX|1|2a|G|517
6XHX|1|2a|C|518
6XHX|1|2a|C|519
6XHX|1|2a|A|520
6XHX|1|2a|G|521
*
6XHX|1|2a|C|528
6XHX|1|2a|G|529
6XHX|1|2a|G|530
6XHX|1|2a|U|531
6XHX|1|2a|A|532
6XHX|1|2a|A|533
6XHX|1|2a|U|534
6XHX|1|2a|A|535
6XHX|1|2a|C|536

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2c

30S ribosomal protein S3

Chain 2d

30S ribosomal protein S4

Chain 2l

30S ribosomal protein S12

Chain 2y

Ribosome-associated inhibitor A