IL_6XHX_323

3D structure

PDB id

6XHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with erythromycin and protein Y (YfiA) at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

6XHX|1|2a|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XHX_323 not in the Motif Atlas

Homologous match to IL_4LFB_037

Geometric discrepancy: 0.1439

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

6XHX|1|2a|G|933
6XHX|1|2a|C|934
6XHX|1|2a|A|935
*
6XHX|1|2a|U|1380
6XHX|1|2a|U|1381
6XHX|1|2a|C|1382
6XHX|1|2a|C|1383
6XHX|1|2a|C|1384

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2g

30S ribosomal protein S7

Chain 2i

30S ribosomal protein S9

Chain 2y

Ribosome-associated inhibitor A