IL_6XHX_358

3D structure

PDB id

6XHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with erythromycin and protein Y (YfiA) at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GUC*GAUAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XHX_358 not in the Motif Atlas

Homologous match to IL_6CZR_361

Geometric discrepancy: 0.1858

The information below is about IL_6CZR_361

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_56539.1

Basepair signature

cWW-cWW-cSH-cWW-L

Number of instances in this motif group

4

Unit IDs

6XHX|1|2a|G|597
6XHX|1|2a|U|598
6XHX|1|2a|C|599
*
6XHX|1|2a|G|639
6XHX|1|2a|A|640
6XHX|1|2a|U|641
6XHX|1|2a|A|642
6XHX|1|2a|C|643

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2h

30S ribosomal protein S8

Chain 2q

30S ribosomal protein S17