IL_6XHY_060

3D structure

PDB id

6XHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with telithromycin, mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

6XHY|1|1A|C|1543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XHY_060 not in the Motif Atlas

Homologous match to IL_7RQB_063

Geometric discrepancy: 0.0694

The information below is about IL_7RQB_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02656.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6XHY|1|1A|G|1526
6XHY|1|1A|G|1527
6XHY|1|1A|A|1528
6XHY|1|1A|A|1528|||A
6XHY|1|1A|G|1529
*
6XHY|1|1A|U|1540
6XHY|1|1A|G|1541
6XHY|1|1A|A|1542
6XHY|1|1A|C|1543
6XHY|1|1A|A|1544
6XHY|1|1A|A|1545
6XHY|1|1A|C|1546

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains