IL_6XHY_083

3D structure

PDB id

6XHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with telithromycin, mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XHY_083 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.3635

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

6XHY|1|1A|G|2124
6XHY|1|1A|G|2125
6XHY|1|1A|A|2126
6XHY|1|1A|G|2127
*
6XHY|1|1A|C|2161
6XHY|1|1A|G|2162
6XHY|1|1A|C|2163
6XHY|1|1A|C|2164
6XHY|1|1A|G|2165
6XHY|1|1A|G|2166
6XHY|1|1A|U|2167
6XHY|1|1A|G|2168
6XHY|1|1A|A|2169
6XHY|1|1A|A|2170
6XHY|1|1A|A|2171
6XHY|1|1A|U|2172
6XHY|1|1A|A|2173
6XHY|1|1A|C|2174

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1y

Transfer RNA; tRNA