IL_6XHY_100

3D structure

PDB id

6XHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with telithromycin, mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XHY_100 not in the Motif Atlas

Geometric match to IL_7RQB_103

Geometric discrepancy: 0.0475

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6XHY|1|1A|C|2652
6XHY|1|1A|U|2653
6XHY|1|1A|A|2654
6XHY|1|1A|G|2655
6XHY|1|1A|U|2656
6XHY|1|1A|A|2657
6XHY|1|1A|C|2658
*
6XHY|1|1A|G|2663
6XHY|1|1A|G|2664
6XHY|1|1A|A|2665
6XHY|1|1A|C|2666
6XHY|1|1A|C|2667
6XHY|1|1A|G|2668

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1H

50S ribosomal protein L6