IL_6XHY_251

3D structure

PDB id

6XHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with telithromycin, mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XHY_251 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.4071

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

6XHY|1|2A|G|2110
6XHY|1|2A|C|2111
6XHY|1|2A|G|2112
6XHY|1|2A|U|2113
6XHY|1|2A|A|2114
6XHY|1|2A|G|2115
6XHY|1|2A|G|2116
6XHY|1|2A|A|2117
6XHY|1|2A|U|2118
6XHY|1|2A|A|2119
6XHY|1|2A|G|2120
*
6XHY|1|2A|C|2178
6XHY|1|2A|C|2179

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2y

Transfer RNA; tRNA