IL_6XHY_313

3D structure

PDB id

6XHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with telithromycin, mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

6XHY|1|2a|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XHY_313 not in the Motif Atlas

Homologous match to IL_4LFB_031

Geometric discrepancy: 0.1005

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

6XHY|1|2a|G|683
6XHY|1|2a|A|684
6XHY|1|2a|G|685
6XHY|1|2a|U|686
6XHY|1|2a|A|687
6XHY|1|2a|G|688
*
6XHY|1|2a|C|699
6XHY|1|2a|G|700
6XHY|1|2a|C|701
6XHY|1|2a|A|702
6XHY|1|2a|G|703
6XHY|1|2a|A|704
6XHY|1|2a|U|705
6XHY|1|2a|A|706
6XHY|1|2a|C|707

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2k

30S ribosomal protein S11