IL_6XII_045

3D structure

PDB id

6XII (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 24 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

GAAG*UGUGCCUUCGGGAAC

Length

19 nucleotides

Bulged bases

6XII|1|D|U|1025, 6XII|1|D|U|1030, 6XII|1|D|G|1032

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XII|1|D|G|1003
6XII|1|D|A|1004
6XII|1|D|A|1005
6XII|1|D|G|1006
*
6XII|1|D|U|1023
6XII|1|D|G|1024
6XII|1|D|U|1025
6XII|1|D|G|1026
6XII|1|D|C|1027
6XII|1|D|C|1028
6XII|1|D|U|1029
6XII|1|D|U|1030
6XII|1|D|C|1031
6XII|1|D|G|1032
6XII|1|D|G|1033
6XII|1|D|G|1034
6XII|1|D|A|1035
6XII|1|D|A|1036
6XII|1|D|C|1037

Current chains

Chain D

16S rRNA

Nearby chains

Chain S

30S ribosomal protein S14