IL_6XII_075

3D structure

PDB id

6XII (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 24 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XII_075 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.2433

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6XII|1|a|C|274
6XII|1|a|C|275
6XII|1|a|U|276
6XII|1|a|G|277
6XII|1|a|A|278
6XII|1|a|A|279
6XII|1|a|U|280
6XII|1|a|C|281
*
6XII|1|a|G|359
6XII|1|a|U|360
6XII|1|a|G|361
6XII|1|a|A|362
6XII|1|a|G|363

Current chains

Chain a

23S rRNA

Nearby chains