IL_6XII_133

3D structure

PDB id

6XII (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 24 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

ACUAGG*CUGU

Length

10 nucleotides

Bulged bases

6XII|1|a|G|1992

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XII_133 not in the Motif Atlas

Homologous match to IL_5J7L_307

Geometric discrepancy: 0.0479

The information below is about IL_5J7L_307

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

6XII|1|a|A|1669
6XII|1|a|C|1670
6XII|1|a|U|1671
6XII|1|a|A|1672
6XII|1|a|G|1673
6XII|1|a|G|1674
*
6XII|1|a|C|1990
6XII|1|a|U|1991
6XII|1|a|G|1992
6XII|1|a|U|1993

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L3

Chain t

50S ribosomal protein L14