IL_6XII_156

3D structure

PDB id

6XII (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 24 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

UGGGAG*CGACCUUGAAAUACCA

Length

22 nucleotides

Bulged bases

6XII|1|a|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XII|1|a|U|2122
6XII|1|a|G|2123
6XII|1|a|G|2124
6XII|1|a|G|2125
6XII|1|a|A|2126
6XII|1|a|G|2127
*
6XII|1|a|C|2161
6XII|1|a|G|2162
6XII|1|a|A|2163
6XII|1|a|C|2164
6XII|1|a|C|2165
6XII|1|a|U|2166
6XII|1|a|U|2167
6XII|1|a|G|2168
6XII|1|a|A|2169
6XII|1|a|A|2170
6XII|1|a|A|2171
6XII|1|a|U|2172
6XII|1|a|A|2173
6XII|1|a|C|2174
6XII|1|a|C|2175
6XII|1|a|A|2176

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA