IL_6XII_191

3D structure

PDB id

6XII (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 24 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

GAAGCGACC*GCAAGCGGACC

Length

20 nucleotides

Bulged bases

6XII|1|D|A|1257, 6XII|1|D|A|1280, 6XII|1|D|C|1281

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XII|1|D|G|1255
6XII|1|D|A|1256
6XII|1|D|A|1257
6XII|1|D|G|1258
6XII|1|D|C|1259
6XII|1|D|G|1260
6XII|1|D|A|1261
6XII|1|D|C|1262
6XII|1|D|C|1263
*
6XII|1|D|G|1272
6XII|1|D|C|1273
6XII|1|D|A|1274
6XII|1|D|A|1275
6XII|1|D|G|1276
6XII|1|D|C|1277
6XII|1|D|G|1278
6XII|1|D|G|1279
6XII|1|D|A|1280
6XII|1|D|C|1281
6XII|1|D|C|1282

Current chains

Chain D

16S rRNA

Nearby chains

Chain AB

Transcription termination/antitermination protein NusG

Chain I

30S ribosomal protein S3

Chain P

30S ribosomal protein S10

Chain S

30S ribosomal protein S14

Chain W

30S ribosomal protein S19