IL_6XIJ_198
3D structure
- PDB id
- 6XIJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex A (TTC-A) containing an 24 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8 Å
Loop
- Sequence
- UUAAUUGAUG*UUGAUCGAAG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XIJ_198 not in the Motif Atlas
- Homologous match to IL_5J7L_387
- Geometric discrepancy: 0.0595
- The information below is about IL_5J7L_387
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_61249.1
- Basepair signature
- cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
6XIJ|1|a|U|1851
6XIJ|1|a|U|1852
6XIJ|1|a|A|1853
6XIJ|1|a|A|1854
6XIJ|1|a|U|1855
6XIJ|1|a|U|1856
6XIJ|1|a|G|1857
6XIJ|1|a|A|1858
6XIJ|1|a|U|1859
6XIJ|1|a|G|1860
*
6XIJ|1|a|U|1882
6XIJ|1|a|U|1883
6XIJ|1|a|G|1884
6XIJ|1|a|A|1885
6XIJ|1|a|U|1886
6XIJ|1|a|C|1887
6XIJ|1|a|G|1888
6XIJ|1|a|A|1889
6XIJ|1|a|A|1890
6XIJ|1|a|G|1891
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain A
- Transfer RNA; tRNA
Coloring options: