IL_6XIQ_006

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GUACC*GUGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIQ|1|1|G|128
6XIQ|1|1|U|129
6XIQ|1|1|A|130
6XIQ|1|1|C|131
6XIQ|1|1|C|132
*
6XIQ|1|1|G|137
6XIQ|1|1|U|138
6XIQ|1|1|G|139
6XIQ|1|1|C|140

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain G

RPL8A isoform 1

Chain N

60S ribosomal protein L15-A

Chain X

60S ribosomal protein L25

Chain h

60S ribosomal protein L35-A