IL_6XIQ_023

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CCUGAUG*CGGAUGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIQ|1|1|C|757
6XIQ|1|1|C|758
6XIQ|1|1|U|759
6XIQ|1|1|G|760
6XIQ|1|1|A|761
6XIQ|1|1|U|762
6XIQ|1|1|G|763
*
6XIQ|1|1|C|768
6XIQ|1|1|G|769
6XIQ|1|1|G|770
6XIQ|1|1|A|771
6XIQ|1|1|U|772
6XIQ|1|1|G|773
6XIQ|1|1|G|774

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain L

60S ribosomal protein L13-A

Chain a

60S ribosomal protein L28

Chain b

RPL29 isoform 1

Chain o

60S ribosomal protein L42-A