3D structure

PDB id
6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
GAAAG*CUAGUAGC
Length
13 nucleotides
Bulged bases
6XIQ|1|1|A|933, 6XIQ|1|1|A|936, 6XIQ|1|1|G|937
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6XIQ|1|1|G|805
6XIQ|1|1|A|806
6XIQ|1|1|A|807
6XIQ|1|1|A|808
6XIQ|1|1|G|809
*
6XIQ|1|1|C|931
6XIQ|1|1|U|932
6XIQ|1|1|A|933
6XIQ|1|1|G|934
6XIQ|1|1|U|935
6XIQ|1|1|A|936
6XIQ|1|1|G|937
6XIQ|1|1|C|938

Current chains

Chain 1
35S ribosomal RNA

Nearby chains

Chain C
RPL4A isoform 1
Chain L
60S ribosomal protein L13-A
Chain N
60S ribosomal protein L15-A
Chain a
60S ribosomal protein L28
Chain j
60S ribosomal protein L37-A

Coloring options:

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