IL_6XIQ_035

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GCGAAUG*CAAAC

Length

12 nucleotides

Bulged bases

6XIQ|1|1|G|1001

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIQ|1|1|G|999
6XIQ|1|1|C|1000
6XIQ|1|1|G|1001
6XIQ|1|1|A|1002
6XIQ|1|1|A|1003
6XIQ|1|1|U|1004
6XIQ|1|1|G|1005
*
6XIQ|1|1|C|1045
6XIQ|1|1|A|1046
6XIQ|1|1|A|1047
6XIQ|1|1|A|1048
6XIQ|1|1|C|1049

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain AZ

Transfer RNA; tRNA

Chain D

RPL5 isoform 1

Chain I

RPL10 isoform 1

Chain T

60S ribosomal protein L21-A