IL_6XIQ_072

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIQ_072 not in the Motif Atlas

Geometric match to IL_5TBW_111

Geometric discrepancy: 0.3215

The information below is about IL_5TBW_111

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

6XIQ|1|1|G|1898
6XIQ|1|1|G|1899
6XIQ|1|1|A|1900
6XIQ|1|1|A|1901
*
6XIQ|1|1|U|2336
6XIQ|1|1|C|2337

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain B

RPL3 isoform 1

Chain V

60S ribosomal protein L23-A