IL_6XIQ_077

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CUG*CGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIQ_077 not in the Motif Atlas

Geometric match to IL_4V9K_064

Geometric discrepancy: 0.3828

The information below is about IL_4V9K_064

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6XIQ|1|1|C|2128
6XIQ|1|1|U|2129
6XIQ|1|1|G|2130
*
6XIQ|1|1|C|2322
6XIQ|1|1|G|2323
6XIQ|1|1|A|2324
6XIQ|1|1|G|2325

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain p

60S ribosomal protein L43-A