IL_6XIQ_088

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GUU*AC

Length

5 nucleotides

Bulged bases

6XIQ|1|1|U|2410

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIQ_088 not in the Motif Atlas

Geometric match to IL_2OIU_003

Geometric discrepancy: 0.2819

The information below is about IL_2OIU_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6XIQ|1|1|G|2409
6XIQ|1|1|U|2410
6XIQ|1|1|U|2411
*
6XIQ|1|1|A|2811
6XIQ|1|1|C|2812

Current chains

Chain 1

35S ribosomal RNA

Nearby chains