IL_6XIQ_091

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GGUGUAGAAUAA*UAC

Length

15 nucleotides

Bulged bases

6XIQ|1|1|U|2453, 6XIQ|1|1|G|2454, 6XIQ|1|1|U|2455, 6XIQ|1|1|A|2456, 6XIQ|1|1|G|2457, 6XIQ|1|1|A|2458, 6XIQ|1|1|A|2459, 6XIQ|1|1|U|2460, 6XIQ|1|1|A|2461, 6XIQ|1|1|A|2494

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIQ|1|1|G|2451
6XIQ|1|1|G|2452
6XIQ|1|1|U|2453
6XIQ|1|1|G|2454
6XIQ|1|1|U|2455
6XIQ|1|1|A|2456
6XIQ|1|1|G|2457
6XIQ|1|1|A|2458
6XIQ|1|1|A|2459
6XIQ|1|1|U|2460
6XIQ|1|1|A|2461
6XIQ|1|1|A|2462
*
6XIQ|1|1|U|2493
6XIQ|1|1|A|2494
6XIQ|1|1|C|2495

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain AP

RPS25A isoform 1

Chain AX

Transfer RNA; tRNA

Chain L1

RPL1A isoform 1

Chain v

Rps5p